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SRX479403: Illumina amplicon sequencing of metagenomic paired-end library 'Pond-323610' containing sample 'M34D21' from individual 'MyD88 TB Infected Mouse 4 Day 21'
8 ILLUMINA (Illumina HiSeq 2000) runs: 14.4M spots, 2.9G bases, 1.7Gb downloads

UUID: e3cd2aff-e1a6-4557-8e7c-4a75291ebb71
Design: Illumina sequencing of Mycobacterium tuberculosis M34D21 via polymerase chain reaction
Submitted by: Broad Institute (BI)
Study: TB-ARC - Microbiome
PRJNA219721 • SRP032325 • All experiments • All runs
Sample: Generic sample from Mycobacterium tuberculosis M34D21
SAMN02391104 • SRS515938 • All experiments • All runs
Organism: Mycobacterium tuberculosis M34D21
Library:
Name: Pond-323610
Instrument: Illumina HiSeq 2000
Strategy: AMPLICON
Source: METAGENOMIC
Selection: PCR
Layout: PAIRED
Spot descriptor:
1  forward102  reverse

Experiment attributes: (show all 13 attributes...) (hide...)
analysis_type: AssemblyWithReference
data_type: WGS
gssr_id: 479245.0
library_type: WholeGenomeShotgun
lsid: broadinstitute.org:bsp.prod.sample:5EPQG
material_type: DNA:DNA Somatic
product_order: PDO-2970
product_part_number: P-WG-0004
project: G61400
research_project: RP-114
root_sample_id: SM-4PMCL
sample_id: SM-5EPQG
work_request: 40078
Pipeline: show...hide...
NameStepProgramVersionNotes
base caller2014-02-25 04:49:26.0GAPipelineRTA1.17.21.3Sequencer Application 2.1.35.0
Runs: 8 runs, 14.4M spots, 2.9G bases, 1.7Gb
Run# of Spots# of BasesSizePublished
SRR11800801,819,791367.6M215.4Mb2014-03-01
SRR11828891,804,295364.5M211.2Mb2014-03-05
SRR11831531,774,629358.5M208.4Mb2014-03-05
SRR11831721,795,077362.6M210.3Mb2014-03-05
SRR11832411,802,778364.2M211.9Mb2014-03-05
SRR11833331,859,448375.6M220.4Mb2014-03-05
SRR11834041,804,481364.5M212.2Mb2014-03-05
SRR11836681,786,626360.9M210.9Mb2014-03-05

ID:
668837

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